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Bioinformatics with Python Cookbook

You're reading from Bioinformatics with Python Cookbook Learn how to use modern Python bioinformatics libraries and applications to do cutting-edge research in computational biology

Product type Paperback

Published in Jun 2015

Publisher

ISBN-13 9781782175117

Length 306 pages

Edition 1st Edition

Languages

Python

Tools

Biopython

Concepts

Application Development

Table of Contents (11) Chapters

Preface

1. Python and the Surrounding Software Ecology

2. Next-generation Sequencing FREE CHAPTER

3. Working with Genomes

4. Population Genetics

5. Population Genetics Simulation

6. Phylogenetics

7. Using the Protein Data Bank

8. Other Topics in Bioinformatics

9. Python for Big Genomics Datasets

Index

Chapter 3. Working with Genomes

In this chapter, we will cover the following recipes:

Working with high-quality reference genomes
Dealing with low-quality reference genomes
Traversing genome annotations
Extracting genes from a reference using annotations
Finding orthologues using the Ensembl REST API
Retrieving gene ontology information from Ensembl

The rest of the chapter is locked

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