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R High Performance Programming

You're reading from   R High Performance Programming Overcome performance difficulties in R with a range of exciting techniques and solutions

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Product type Paperback
Published in Jan 2015
Publisher
ISBN-13 9781783989263
Length 176 pages
Edition 1st Edition
Languages
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Authors (2):
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Tjhi W Chandra Tjhi W Chandra
Author Profile Icon Tjhi W Chandra
Tjhi W Chandra
Aloysius Shao Qin Lim Aloysius Shao Qin Lim
Author Profile Icon Aloysius Shao Qin Lim
Aloysius Shao Qin Lim
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Toc

Table of Contents (12) Chapters Close

Preface 1. Understanding R's Performance – Why Are R Programs Sometimes Slow? FREE CHAPTER 2. Profiling – Measuring Code's Performance 3. Simple Tweaks to Make R Run Faster 4. Using Compiled Code for Greater Speed 5. Using GPUs to Run R Even Faster 6. Simple Tweaks to Use Less RAM 7. Processing Large Datasets with Limited RAM 8. Multiplying Performance with Parallel Computing 9. Offloading Data Processing to Database Systems 10. R and Big Data Index

Summary

In this chapter, we covered a variety of techniques to leverage code in compiled languages for a near-native CPU performance. While the examples focused on C and C++, similar approaches can be used with Fortran or Java.

We first saw how compiling an R code before its execution by using the compile package can provide modest performance gains, especially for code with many loops and basic operations. JIT compilation does the same automatically for executing any R code. There is a limit, however, to how much an R code can be optimized because R is a dynamic language at its core.

Looking beyond R, we used C and C++ to achieve dramatic performance improvements. We learned how to define a C function from within R, using the inline package, and how to use Rcpp to call an external C++ function from R.

In the process, we learned about how R represents different types of data in C/C++ using SEXP pointers and SEXPREC record structures, and how to manipulate R objects using these constructs....

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