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R Bioinformatics Cookbook

You're reading from   R Bioinformatics Cookbook Use R and Bioconductor to perform RNAseq, genomics, data visualization, and bioinformatic analysis

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Product type Paperback
Published in Oct 2019
Publisher Packt
ISBN-13 9781789950694
Length 316 pages
Edition 1st Edition
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Authors (2):
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Dr Dan Maclean Dr Dan Maclean
Author Profile Icon Dr Dan Maclean
Dr Dan Maclean
Dan MacLean Dan MacLean
Author Profile Icon Dan MacLean
Dan MacLean
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Toc

Table of Contents (13) Chapters Close

Preface 1. Performing Quantitative RNAseq 2. Finding Genetic Variants with HTS Data FREE CHAPTER 3. Searching Genes and Proteins for Domains and Motifs 4. Phylogenetic Analysis and Visualization 5. Metagenomics 6. Proteomics from Spectrum to Annotation 7. Producing Publication and Web-Ready Visualizations 8. Working with Databases and Remote Data Sources 9. Useful Statistical and Machine Learning Methods 10. Programming with Tidyverse and Bioconductor 11. Building Objects and Packages for Code Reuse 12. Other Books You May Enjoy

Preface

In R Bioinformatics Cookbook, you will encounter common and not-so-common challenges in the bioinformatics domain using real-world examples.

This book will use a recipe-based approach to help you perform practical research and analysis in computational biology with R. You will gain an understanding of your data through the analysis of Bioconductor, ggplot, and the tidyverse library in bioinformatics. You will be introduced to a number of essential tools in Bioconductor so that you can understand and carry out protocols in RNAseq, phylogenetics, genomics, and sequence analysis. You will also learn how machine learning techniques can be used in the bioinformatics domain. You will develop key computational skills, such as developing workflows in R Markdown and designing your own packages for efficient and reproducible code reuse.

By the end of this book, you'll have a solid understanding of the most important and widely used techniques in bioinformatic analysis, as well as the tools you'll need to work with real biological data.

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