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Bioinformatics with Python Cookbook

You're reading from Bioinformatics with Python Cookbook Learn how to use modern Python bioinformatics libraries and applications to do cutting-edge research in computational biology

Product type Paperback

Published in Jun 2015

Publisher

ISBN-13 9781782175117

Length 306 pages

Edition 1st Edition

Languages

Python

Tools

Biopython

Concepts

Application Development

Table of Contents (11) Chapters

Preface

1. Python and the Surrounding Software Ecology

2. Next-generation Sequencing FREE CHAPTER

3. Working with Genomes

4. Population Genetics

5. Population Genetics Simulation

6. Phylogenetics

7. Using the Protein Data Bank

8. Other Topics in Bioinformatics

9. Python for Big Genomics Datasets

Index

Chapter 2. Next-generation Sequencing

In this chapter, we will cover the following recipes:

Accessing GenBank and moving around NCBI databases
Performing basic sequence analysis
Working with modern sequence formats
Working with alignment data
Analyzing data in variant call format (VCF)
Studying genome accessibility and filtering SNP data

You have been reading a chapter from

Bioinformatics with Python Cookbook

Published in: Jun 2015

Publisher:

ISBN-13: 9781782175117

© 2015 Packt Publishing Limited All Rights Reserved

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