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Mastering Scientific Computing with R

You're reading from   Mastering Scientific Computing with R Employ professional quantitative methods to answer scientific questions with a powerful open source data analysis environment

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Product type Paperback
Published in Jan 2015
Publisher
ISBN-13 9781783555253
Length 432 pages
Edition 1st Edition
Languages
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Toc

Table of Contents (12) Chapters Close

Preface 1. Programming with R 2. Statistical Methods with R FREE CHAPTER 3. Linear Models 4. Nonlinear Methods 5. Linear Algebra 6. Principal Component Analysis and the Common Factor Model 7. Structural Equation Modeling and Confirmatory Factor Analysis 8. Simulations 9. Optimization 10. Advanced Data Management Index

Generalized linear models

We just saw how to fit our data to a model using linear regression. However, as we just saw, in order for our model to be valid, it must make the assumption that the variance is constant and the errors are normally distributed. A generalized linear model (GLM) is an alternative approach to linear regression, which allows the errors to follow probability distributions other than a normal distribution. GLM is typically used for response variables that represent count data or binary response variables. To fit your data to a GLM in R, you can use the glm() function.

GLM has three important properties:

  • An error structure
  • A linear predictor
  • A link function

The error structure informs us of the error distribution to use to model the data and is specified by the family argument. For example, you might want to use a Poisson distribution to model the errors for count data and a Gamma distribution to model data showing a constant coefficient of variation as follows:

glm(y ~ z,...
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