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Data Analysis with R, Second Edition

You're reading from   Data Analysis with R, Second Edition A comprehensive guide to manipulating, analyzing, and visualizing data in R

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Product type Paperback
Published in Mar 2018
Publisher Packt
ISBN-13 9781788393720
Length 570 pages
Edition 2nd Edition
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Author (1):
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Tony Fischetti Tony Fischetti
Author Profile Icon Tony Fischetti
Tony Fischetti
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Table of Contents (19) Chapters Close

Preface 1. RefresheR FREE CHAPTER 2. The Shape of Data 3. Describing Relationships 4. Probability 5. Using Data To Reason About The World 6. Testing Hypotheses 7. Bayesian Methods 8. The Bootstrap 9. Predicting Continuous Variables 10. Predicting Categorical Variables 11. Predicting Changes with Time 12. Sources of Data 13. Dealing with Missing Data 14. Dealing with Messy Data 15. Dealing with Large Data 16. Working with Popular R Packages 17. Reproducibility and Best Practices 18. Other Books You May Enjoy

Performing the bootstrap in R (more elegantly)


One of the beautiful things about the bootstrap technique is that it can be performed easily using only the level of R programming that we reached by the conclusion of Chapter 1, RefresheR however, there is, and as you might imagine, a more automated way of doing this in R. We will be using the boot package for this, so make sure you install it:

 btobj <- boot(our.sample, function(x, i){mean(x[i])}, 10000,
                parallel="multicore", ncpus=3)

That looks simple enough, but let's take a closer look at this code:

  • As the first argument, the boot function takes the sample that we are using the bootstrap procedure on; in our case, we are passing it our sample of 40 that we took earlier.
  • The second argument is a function that, itself, takes two arguments: an indexable R object (like a vector), and a list of indices that we will use to subset this object. The result of using these indices on the object will give us our bootstrap sample.
  • The...
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