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R High Performance Programming

You're reading from   R High Performance Programming Overcome performance difficulties in R with a range of exciting techniques and solutions

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Product type Paperback
Published in Jan 2015
Publisher
ISBN-13 9781783989263
Length 176 pages
Edition 1st Edition
Languages
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Authors (2):
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Tjhi W Chandra Tjhi W Chandra
Author Profile Icon Tjhi W Chandra
Tjhi W Chandra
Aloysius Shao Qin Lim Aloysius Shao Qin Lim
Author Profile Icon Aloysius Shao Qin Lim
Aloysius Shao Qin Lim
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Toc

Table of Contents (12) Chapters Close

Preface 1. Understanding R's Performance – Why Are R Programs Sometimes Slow? FREE CHAPTER 2. Profiling – Measuring Code's Performance 3. Simple Tweaks to Make R Run Faster 4. Using Compiled Code for Greater Speed 5. Using GPUs to Run R Even Faster 6. Simple Tweaks to Use Less RAM 7. Processing Large Datasets with Limited RAM 8. Multiplying Performance with Parallel Computing 9. Offloading Data Processing to Database Systems 10. R and Big Data Index

Using memory-mapped files and processing data in chunks


Some datasets are so large that even after applying all memory optimization techniques and using the most efficient data types possible, they are still too large to fit in or be processed in the memory. Short of getting additional RAM, one way to work with such large data is to store them on a disk in the form of memory-mapped files and load the data into the memory for processing one small chunk at a time.

For example, say we have a dataset that would require 100 GB of RAM if it is fully loaded into the memory and another 100 GB of free memory for the computations that need to be performed on the data. If the computer on which the data is to be processed only has 64 GB of RAM, we might divide the data into four chunks of 25 GB each. The R program will then load the data into the memory one chunk at a time and perform the necessary computations on each chunk. After all the chunks have been processed, the results from each chunk-wise...

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