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R High Performance Programming

You're reading from   R High Performance Programming Overcome performance difficulties in R with a range of exciting techniques and solutions

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Product type Paperback
Published in Jan 2015
Publisher
ISBN-13 9781783989263
Length 176 pages
Edition 1st Edition
Languages
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Authors (2):
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Tjhi W Chandra Tjhi W Chandra
Author Profile Icon Tjhi W Chandra
Tjhi W Chandra
Aloysius Shao Qin Lim Aloysius Shao Qin Lim
Author Profile Icon Aloysius Shao Qin Lim
Aloysius Shao Qin Lim
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Table of Contents (12) Chapters Close

Preface 1. Understanding R's Performance – Why Are R Programs Sometimes Slow? FREE CHAPTER 2. Profiling – Measuring Code's Performance 3. Simple Tweaks to Make R Run Faster 4. Using Compiled Code for Greater Speed 5. Using GPUs to Run R Even Faster 6. Simple Tweaks to Use Less RAM 7. Processing Large Datasets with Limited RAM 8. Multiplying Performance with Parallel Computing 9. Offloading Data Processing to Database Systems 10. R and Big Data Index

Data parallelism versus task parallelism


Many modern software applications are designed to run computations in parallel in order to take advantage of the multiple CPU cores available on almost any computer today. Many R programs can similarly be written in order to run in parallel. However, the extent of possible parallelism depends on the computing task involved. On one side of the scale are embarrassingly parallel tasks, where there are no dependencies between the parallel subtasks; such tasks can be made to run in parallel very easily. An example of this is, building an ensemble of decision trees in a random forest algorithm—randomized decision trees can be built independently from one another and in parallel across tens or hundreds of CPUs, and can be combined to form the random forest. On the other end of the scale are tasks that cannot be parallelized, as each step of the task depends on the results of the previous step. One such example is a depth-first search of a tree, where the...

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