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R High Performance Programming

You're reading from   R High Performance Programming Overcome performance difficulties in R with a range of exciting techniques and solutions

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Product type Paperback
Published in Jan 2015
Publisher
ISBN-13 9781783989263
Length 176 pages
Edition 1st Edition
Languages
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Authors (2):
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Tjhi W Chandra Tjhi W Chandra
Author Profile Icon Tjhi W Chandra
Tjhi W Chandra
Aloysius Shao Qin Lim Aloysius Shao Qin Lim
Author Profile Icon Aloysius Shao Qin Lim
Aloysius Shao Qin Lim
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Toc

Table of Contents (12) Chapters Close

Preface 1. Understanding R's Performance – Why Are R Programs Sometimes Slow? FREE CHAPTER 2. Profiling – Measuring Code's Performance 3. Simple Tweaks to Make R Run Faster 4. Using Compiled Code for Greater Speed 5. Using GPUs to Run R Even Faster 6. Simple Tweaks to Use Less RAM 7. Processing Large Datasets with Limited RAM 8. Multiplying Performance with Parallel Computing 9. Offloading Data Processing to Database Systems 10. R and Big Data Index

Executing tasks in parallel on a cluster of computers


By using the parallel package, we are not limited to running parallel code on a single computer; we can also do it on a cluster of computers. This allows much larger computational tasks to be performed, irrespective of whether we use data parallelism or task parallelism. Only socket-based clusters can be used for this purpose, as processes cannot be forked onto a different computer.

There are many ways to set up a cluster of computers to work with R. To keep things simple, all computers in the cluster should have the same configuration for R—the same version of R, installed in the same directories, installed with the same versions of any packages required, and running on the same operating system. The examples in this section have been tested on a cluster of three computers running Ubuntu 14.04—one master node and two worker nodes.

The master and worker nodes should be on the same network and able to communicate with each other via SSH...

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