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R High Performance Programming

You're reading from   R High Performance Programming Overcome performance difficulties in R with a range of exciting techniques and solutions

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Product type Paperback
Published in Jan 2015
Publisher
ISBN-13 9781783989263
Length 176 pages
Edition 1st Edition
Languages
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Authors (2):
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Tjhi W Chandra Tjhi W Chandra
Author Profile Icon Tjhi W Chandra
Tjhi W Chandra
Aloysius Shao Qin Lim Aloysius Shao Qin Lim
Author Profile Icon Aloysius Shao Qin Lim
Aloysius Shao Qin Lim
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Toc

Table of Contents (12) Chapters Close

Preface 1. Understanding R's Performance – Why Are R Programs Sometimes Slow? FREE CHAPTER 2. Profiling – Measuring Code's Performance 3. Simple Tweaks to Make R Run Faster 4. Using Compiled Code for Greater Speed 5. Using GPUs to Run R Even Faster 6. Simple Tweaks to Use Less RAM 7. Processing Large Datasets with Limited RAM 8. Multiplying Performance with Parallel Computing 9. Offloading Data Processing to Database Systems 10. R and Big Data Index

Summary


In this chapter, we learned how R stores vectors in memory, and how to estimate the amount of memory required for different types of data. We also learned how to use more efficient data structures like sparse matrices and bit vectors in order to store some types of data, so that they can be fully loaded and processed in the memory.

For datasets that are still too large, we used big.matrix, ff, and ffdf objects to store memory on disk using memory-mapped files and processed the data one chunk at a time. The bigmemory and ff packages, along with their companion packages, provide a rich set of functionality for memory-mapped files that cannot be covered fully, in this book. We encourage you to look up the documentation for these packages to learn more about how to take advantage of the power of memory-mapped files when you handle large datasets.

In the next chapter, we will look beyond running R in a single process or thread, and learn how to run R computations in parallel.

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