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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

Developing models

Model development is my favorite part of the DL life cycle (and probably 90% of data scientists’ favorite part too). The goal of model development is to build a model with minimum loss over training and validation datasets to prevent overfitting, which is done by searching for the parameters that best fit the model. A typical model development phase involves four different steps, as shown in the following diagram:

Figure 9.4 – Different steps of the DL model building phase

Let’s discuss each of the four steps briefly:

  1. Selecting an appropriate algorithm: In this step, an appropriate DL algorithm is selected based on the problem that you are solving.
  2. Model training: Once an algorithm is selected, the DL algorithm is provided with the training data, loss function, random hyperparameters, and objective metrics to optimize using backpropagation.
  3. Model tuning: The model initially has random hyperparameters that...
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