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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

Introducing deep learning algorithms and Python libraries

DL is an umbrella term that represents the different neural network architectures, along with the libraries for building the same. Unlike ML, the requirements for DL are quite diverse and the vast number of resources can be intimidating for those either looking to get into this field or those who have already been into it. Let’s look at the top DL libraries and how they can be leveraged to build DL models. There are a few DL libraries that are currently available for building DL models, but we will only highlight the most popular and widely used libraries for building a variety of DL models and architectures – TensorFlow, PyTorch, and Keras. In addition, there are genome-specific DL libraries that are also available. It is beyond the scope of this chapter to go into details about each of these DL libraries, but we will provide fundamentals that are sufficient for building DL models on several use cases, as we will...

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