Search icon CANCEL
Subscription
0
Cart icon
Your Cart (0 item)
Close icon
You have no products in your basket yet
Arrow left icon
Explore Products
Best Sellers
New Releases
Books
Videos
Audiobooks
Learning Hub
Free Learning
Arrow right icon
Arrow up icon
GO TO TOP
Biostatistics with Python

You're reading from   Biostatistics with Python Apply Python for biostatistics with hands-on biomedical and biotechnology projects

Arrow left icon
Product type Paperback
Published in Nov 2024
Publisher Packt
ISBN-13 9781837630967
Length 374 pages
Edition 1st Edition
Languages
Concepts
Arrow right icon
Author (1):
Arrow left icon
Darko Medin Darko Medin
Author Profile Icon Darko Medin
Darko Medin
Arrow right icon
View More author details
Toc

Table of Contents (24) Chapters Close

Preface 1. Part 1:Introduction to Biostatistics and Getting Started with Python
2. Chapter 1: Introduction to Biostatistics FREE CHAPTER 3. Chapter 2: Getting Started with Python for Biostatistics 4. Chapter 3: Exercise 1 – Cleaning and Describing Data Using Python 5. Chapter 4: Part 1 Exemplar Project – Load, Clean, and Describe Diabetes Data in Python 6. Part 2:Introduction to Python for Biostatistics – Methodology and Examples
7. Chapter 5: Introduction to Python for Biostatistics 8. Chapter 6: Biostatistical Inference Using Hypothesis Tests and Effect Sizes 9. Chapter 7: Predictive Biostatistics Using Python 10. Chapter 8: Part 2 Exercise – T-Test, ANOVA, and Linear and Logistic Regression 11. Chapter 9: Biostatistical Inference and Predictive Analytics Using Cardiovascular Study Data 12. Part 3:Clinical Study Design, Analysis, and Synthesizing Evidence
13. Chapter 10: Clinical Study Design 14. Chapter 11: Survival Analysis in Biomedical Research 15. Chapter 12: Meta-Analysis – Synthesizing Evidence from Multiple Studies 16. Chapter 13: Survival Predictive Analysis and Meta-Analysis Practice 17. Chapter 14: Part 3 Exemplar Project – Meta-Analysis of Survival Data in Clinical Research 18. Part 4:Biological and Statistical Variables and Frameworks, and a Final Practical Project from the Field of Biology
19. Chapter 15: Understanding Biological Variables 20. Chapter 16: Data Analysis Frameworks and Performance for Life Sciences Research 21. Chapter 17: Part 4 Exercise – Performing Statistics for Biology Studies in Python 22. Index 23. Other Books You May Enjoy

Implementing the DerSimonian and Laird inverse variance method and investigating heterogeneity in meta-analysis

Let’s look at why we would use the DerSimonian and Laird inverse variance method and how it relates to survival data meta-analysis. The DerSimonian and Laird method makes use of HRs and different variability metrics, such as variances and confidence intervals, to create a meta-analysis model based on inverse variances, that is, inverse variability metrics of the HRs. This works by adding weight to each study based on the inverse variances of the studies. In most meta-analysis approaches, if a study has less variability, it will be assigned more weight in the overall result. Finally, the overall HR and overall confidence interval will be calculated and presented using a forest plot that plots the individual studies.

We will be using the PythonMeta package. Load it as PMA:

Note

Make sure to run pip install PythonMeta before running the code.

import PythonMeta...
lock icon The rest of the chapter is locked
Register for a free Packt account to unlock a world of extra content!
A free Packt account unlocks extra newsletters, articles, discounted offers, and much more. Start advancing your knowledge today.
Unlock this book and the full library FREE for 7 days
Get unlimited access to 7000+ expert-authored eBooks and videos courses covering every tech area you can think of
Renews at $19.99/month. Cancel anytime
Banner background image