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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

Summary

DL has shown great promise in genomics and these methods now match or exceed the current state-of-the-art methods in a diverse array of tasks and disciplines in life sciences and biotechnology. Given this rapid rise in its applicability across broad research areas to understand the complexities of biological systems, its adoption is still low. This can be attributed to several factors, the major among them being the complexity of genomic data. In this final chapter of this book, we have seen some of the challenges and common pitfalls associated with applying DL in genomics, which reduces the effectiveness of these DL methods. Addressing these challenges and pitfalls can be hard because of the complexity of the DL methods. Often, the mistakes are very subtle, and you didn’t know that you are making them. To avoid making these simple mistakes, you must have a deep understanding of the concepts surrounding genomics and DL. One major piece of advice is that if the genomics...

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