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Machine Learning in Biotechnology and Life Sciences

You're reading from   Machine Learning in Biotechnology and Life Sciences Build machine learning models using Python and deploy them on the cloud

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Product type Paperback
Published in Jan 2022
Publisher Packt
ISBN-13 9781801811910
Length 408 pages
Edition 1st Edition
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Author (1):
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Saleh Alkhalifa Saleh Alkhalifa
Author Profile Icon Saleh Alkhalifa
Saleh Alkhalifa
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Table of Contents (17) Chapters Close

Preface 1. Section 1: Getting Started with Data
2. Chapter 1: Introducing Machine Learning for Biotechnology FREE CHAPTER 3. Chapter 2: Introducing Python and the Command Line 4. Chapter 3: Getting Started with SQL and Relational Databases 5. Chapter 4: Visualizing Data with Python 6. Section 2: Developing and Training Models
7. Chapter 5: Understanding Machine Learning 8. Chapter 6: Unsupervised Machine Learning 9. Chapter 7: Supervised Machine Learning 10. Chapter 8: Understanding Deep Learning 11. Chapter 9: Natural Language Processing 12. Chapter 10: Exploring Time Series Analysis 13. Section 3: Deploying Models to Users
14. Chapter 11: Deploying Models with Flask Applications 15. Chapter 12: Deploying Applications to the Cloud 16. Other Books You May Enjoy

Tutorial – clustering and topic modeling

Similar to some of the previous examples we have seen so far, much of our data can either be classified in a supervised setting or clustered in an unsupervised one. In most cases, text-based data is generally made available to us in the form of real-world data in the sense that it is in a raw and unlabeled form.

Let's look at an example where we can make sense of our data and label it from an unsupervised perspective. Our main objective here will be to preprocess our raw text, cluster the data into five clusters, and then determine the main topics for each of those clusters. If you are following along using the provided code and documentation, please note that your results may vary as the dataset is dynamic, and its contents change as new data is populated into the PubMed database. I would urge you to customize the queries to topics that interest you. With that in mind, let's go ahead and begin.

We will begin by querying...

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