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R High Performance Programming

You're reading from   R High Performance Programming Overcome performance difficulties in R with a range of exciting techniques and solutions

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Product type Paperback
Published in Jan 2015
Publisher
ISBN-13 9781783989263
Length 176 pages
Edition 1st Edition
Languages
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Authors (2):
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Tjhi W Chandra Tjhi W Chandra
Author Profile Icon Tjhi W Chandra
Tjhi W Chandra
Aloysius Shao Qin Lim Aloysius Shao Qin Lim
Author Profile Icon Aloysius Shao Qin Lim
Aloysius Shao Qin Lim
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Toc

Table of Contents (12) Chapters Close

Preface 1. Understanding R's Performance – Why Are R Programs Sometimes Slow? FREE CHAPTER 2. Profiling – Measuring Code's Performance 3. Simple Tweaks to Make R Run Faster 4. Using Compiled Code for Greater Speed 5. Using GPUs to Run R Even Faster 6. Simple Tweaks to Use Less RAM 7. Processing Large Datasets with Limited RAM 8. Multiplying Performance with Parallel Computing 9. Offloading Data Processing to Database Systems 10. R and Big Data Index

Using memory-efficient data structures


One of the first things to consider when you work with a large dataset is whether the same information can be stored and processed using more memory-efficient data structures. But first we need to know how data is stored in R. Vectors are the basic building blocks of almost all data types in R. R provides atomic vectors of logical, integer, numeric, complex, character and raw types. Many other data structures are also built from vectors. Lists, for example, are essentially vectors in R's internal storage structures. They differ from atomic vectors in the way that they store pointers to other R objects rather than atomic values. That is why lists can contain objects of different types.

Let's examine how much memory is required for each of the atomic data types. To do that, we will create vectors of each type with 1 million elements and measure their memory consumption using object.size() (for character vectors, we will call rep.int(NA_character_, 1e6...

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