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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

Summary

This chapter introduced you to DL, a subcategory of ML that leverages artificial neural networks to mimic human brains and perform automated tasks without human intervention. DL has certainly come to the fore in the last few years because of the incredible advancements in the availability of big data, sophisticated algorithms, and improvements in computational hardware such as CPUs and GPUs. We started this chapter by understanding why there is a need for sophisticated algorithms to mine insights from ever-growing genomics data and how DL, using DNNs, can fill that gap. The anatomy of the neural network architecture, along with the key components of neural networks, was introduced. Understanding these key concepts is important to be able to build a solid foundation for DL concepts, as well as understand how they relate to genomic applications. Then, you were introduced to the different neural network architectures, such as CNNs, RNNs, GANs, GNNs, and autoencoders, and understood...

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