Search icon CANCEL
Subscription
0
Cart icon
Your Cart (0 item)
Close icon
You have no products in your basket yet
Arrow left icon
Explore Products
Best Sellers
New Releases
Books
Videos
Audiobooks
Learning Hub
Free Learning
Arrow right icon
Arrow up icon
GO TO TOP
Mastering Machine Learning with R

You're reading from   Mastering Machine Learning with R Master machine learning techniques with R to deliver insights for complex projects

Arrow left icon
Product type Paperback
Published in Oct 2015
Publisher
ISBN-13 9781783984527
Length 400 pages
Edition 1st Edition
Languages
Tools
Arrow right icon
Author (1):
Arrow left icon
Cory Lesmeister Cory Lesmeister
Author Profile Icon Cory Lesmeister
Cory Lesmeister
Arrow right icon
View More author details
Toc

Table of Contents (15) Chapters Close

Preface 1. A Process for Success FREE CHAPTER 2. Linear Regression – The Blocking and Tackling of Machine Learning 3. Logistic Regression and Discriminant Analysis 4. Advanced Feature Selection in Linear Models 5. More Classification Techniques – K-Nearest Neighbors and Support Vector Machines 6. Classification and Regression Trees 7. Neural Networks 8. Cluster Analysis 9. Principal Components Analysis 10. Market Basket Analysis and Recommendation Engines 11. Time Series and Causality 12. Text Mining A. R Fundamentals Index

Modeling and evaluation

For the modeling process, we will follow the following steps:

  1. Extract the components and determine the number to retain
  2. Rotate the retained components
  3. Interpret the rotated solution
  4. Create the factor scores
  5. Use the scores as input variables for regression analysis

There are many different ways and packages to conduct PCA in R, including what seems to be the most commonly used prcomp() and princomp() functions in base R. However, for my money, it seems that the psych package is the most flexible with the best options. For rotation with this package, you will also need to load GPArotation.

Component extraction

To extract the components with the psych package, you will use the principal() function. The syntax will include the data (pca.df) and number of the components to extract. We will try 5, and we will state that we do not want to rotate the components at this time. You can choose not to specify nfactors, but the output would be rather lengthy as it would produce k-1 components...

lock icon The rest of the chapter is locked
Register for a free Packt account to unlock a world of extra content!
A free Packt account unlocks extra newsletters, articles, discounted offers, and much more. Start advancing your knowledge today.
Unlock this book and the full library FREE for 7 days
Get unlimited access to 7000+ expert-authored eBooks and videos courses covering every tech area you can think of
Renews at $19.99/month. Cancel anytime
Banner background image