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Biostatistics with Python

You're reading from   Biostatistics with Python Apply Python for biostatistics with hands-on biomedical and biotechnology projects

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Product type Paperback
Published in Nov 2024
Publisher Packt
ISBN-13 9781837630967
Length 374 pages
Edition 1st Edition
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Author (1):
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Darko Medin Darko Medin
Author Profile Icon Darko Medin
Darko Medin
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Table of Contents (24) Chapters Close

Preface 1. Part 1:Introduction to Biostatistics and Getting Started with Python
2. Chapter 1: Introduction to Biostatistics FREE CHAPTER 3. Chapter 2: Getting Started with Python for Biostatistics 4. Chapter 3: Exercise 1 – Cleaning and Describing Data Using Python 5. Chapter 4: Part 1 Exemplar Project – Load, Clean, and Describe Diabetes Data in Python 6. Part 2:Introduction to Python for Biostatistics – Methodology and Examples
7. Chapter 5: Introduction to Python for Biostatistics 8. Chapter 6: Biostatistical Inference Using Hypothesis Tests and Effect Sizes 9. Chapter 7: Predictive Biostatistics Using Python 10. Chapter 8: Part 2 Exercise – T-Test, ANOVA, and Linear and Logistic Regression 11. Chapter 9: Biostatistical Inference and Predictive Analytics Using Cardiovascular Study Data 12. Part 3:Clinical Study Design, Analysis, and Synthesizing Evidence
13. Chapter 10: Clinical Study Design 14. Chapter 11: Survival Analysis in Biomedical Research 15. Chapter 12: Meta-Analysis – Synthesizing Evidence from Multiple Studies 16. Chapter 13: Survival Predictive Analysis and Meta-Analysis Practice 17. Chapter 14: Part 3 Exemplar Project – Meta-Analysis of Survival Data in Clinical Research 18. Part 4:Biological and Statistical Variables and Frameworks, and a Final Practical Project from the Field of Biology
19. Chapter 15: Understanding Biological Variables 20. Chapter 16: Data Analysis Frameworks and Performance for Life Sciences Research 21. Chapter 17: Part 4 Exercise – Performing Statistics for Biology Studies in Python 22. Index 23. Other Books You May Enjoy

Implementing different versions of Student’s t-test

The diabetes dataset contains data from subjects that are with diagnosed diabetes (CLASS: Y), predicted diabetes (CLASS: P), and controls (CLASS: N). Using the available data, we will perform an analysis comparing average values of HbA1c between diagnosed diabetes and controls. The biological parameter we will be analyzing in this exercise is known as HbA1c, or glycosylated hemoglobin, which is higher in diabetes subjects due to the glycation of hemoglobin due to increased blood glucose. Let’s explore how grouping can be made based on the CLASS variable, which contains information on the presence or absence of diagnosed Type 2 Diabetes Mellitus (T2DM).

Figure 8.1 – Comparing HbA1C in diabetes subjects and control group

Figure 8.1 – Comparing HbA1C in diabetes subjects and control group

For this exercise, the main setting is that we are comparing two groups, diabetes subjects (CLASS: Y) and control subjects (CLASS: N). There is a third CLASS, P, or...

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