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Machine Learning in Biotechnology and Life Sciences

You're reading from   Machine Learning in Biotechnology and Life Sciences Build machine learning models using Python and deploy them on the cloud

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Product type Paperback
Published in Jan 2022
Publisher Packt
ISBN-13 9781801811910
Length 408 pages
Edition 1st Edition
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Author (1):
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Saleh Alkhalifa Saleh Alkhalifa
Author Profile Icon Saleh Alkhalifa
Saleh Alkhalifa
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Table of Contents (17) Chapters Close

Preface 1. Section 1: Getting Started with Data
2. Chapter 1: Introducing Machine Learning for Biotechnology FREE CHAPTER 3. Chapter 2: Introducing Python and the Command Line 4. Chapter 3: Getting Started with SQL and Relational Databases 5. Chapter 4: Visualizing Data with Python 6. Section 2: Developing and Training Models
7. Chapter 5: Understanding Machine Learning 8. Chapter 6: Unsupervised Machine Learning 9. Chapter 7: Supervised Machine Learning 10. Chapter 8: Understanding Deep Learning 11. Chapter 9: Natural Language Processing 12. Chapter 10: Exploring Time Series Analysis 13. Section 3: Deploying Models to Users
14. Chapter 11: Deploying Models with Flask Applications 15. Chapter 12: Deploying Applications to the Cloud 16. Other Books You May Enjoy

Summary

In this chapter, we made an adventurous attempt to cover a wide range of NLP topics. We explored a range of introductory topics such as NER, tokenization, and parts of speech using the NLTK and spaCy libraries. We then explored NLP through the lens of structured datasets, in which we utilized the pymed library as a source for scientific literature and proceeded to analyze and clean the data in our preprocessing steps. Next, we developed a word cloud to visualize the frequency of words in a given dataset. Finally, we developed a clustering model to group our abstracts and a topic modeling model to identify prominent topics.

We then explored NLP through the lens of unstructured data in which we explored two common AWS NLP products. We used Textract to convert PDFs and images into searchable and structured text and Comprehend to analyze and provide insights. Finally, we learned how to develop a semantic search engine using deep learning transformers to find pertinent information...

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