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Deep Learning for Genomics

You're reading from   Deep Learning for Genomics Data-driven approaches for genomics applications in life sciences and biotechnology

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Product type Paperback
Published in Nov 2022
Publisher Packt
ISBN-13 9781804615447
Length 270 pages
Edition 1st Edition
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Author (1):
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Upendra Kumar Devisetty Upendra Kumar Devisetty
Author Profile Icon Upendra Kumar Devisetty
Upendra Kumar Devisetty
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Table of Contents (18) Chapters Close

Preface 1. Part 1 – Machine Learning in Genomics
2. Chapter 1: Introducing Machine Learning for Genomics FREE CHAPTER 3. Chapter 2: Genomics Data Analysis 4. Chapter 3: Machine Learning Methods for Genomic Applications 5. Part 2 – Deep Learning for Genomic Applications
6. Chapter 4: Deep Learning for Genomics 7. Chapter 5: Introducing Convolutional Neural Networks for Genomics 8. Chapter 6: Recurrent Neural Networks in Genomics 9. Chapter 7: Unsupervised Deep Learning with Autoencoders 10. Chapter 8: GANs for Improving Models in Genomics 11. Part 3 – Operationalizing models
12. Chapter 9: Building and Tuning Deep Learning Models 13. Chapter 10: Model Interpretability in Genomics 14. Chapter 11: Model Deployment and Monitoring 15. Chapter 12: Challenges, Pitfalls, and Best Practices for Deep Learning in Genomics 16. Index 17. Other Books You May Enjoy

Practical applications of GANs in genomics

GANs have found a lot of applications in several domains such as NLP, CV, and genomics because of their ability to produce synthetic data samples to augment the real world and help improve models’ fitness. State-of-the-art synthetic models such as GANs can produce an artificial version of high-dimensional and complex genomic datasets with high accuracy, scale, and privacy. The artificial datasets can be shared among researchers and enable future genomics research and safe, private data sharing between researchers, health care providers, and the industry. As discussed briefly in the introduction, there are several use cases of GANs in genomics such as the automatic design of probe sequences for binding assays, optimization of genomic sequences, creation of synthetic genomes, and so on.

We will now see some examples of how GANs are applied to genomics and solve some real-world problems in the following section.

Analysis of ScRNA...

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