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Biostatistics with Python

You're reading from   Biostatistics with Python Apply Python for biostatistics with hands-on biomedical and biotechnology projects

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Product type Paperback
Published in Nov 2024
Publisher Packt
ISBN-13 9781837630967
Length 374 pages
Edition 1st Edition
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Concepts
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Author (1):
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Darko Medin Darko Medin
Author Profile Icon Darko Medin
Darko Medin
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Table of Contents (24) Chapters Close

Preface 1. Part 1:Introduction to Biostatistics and Getting Started with Python
2. Chapter 1: Introduction to Biostatistics FREE CHAPTER 3. Chapter 2: Getting Started with Python for Biostatistics 4. Chapter 3: Exercise 1 – Cleaning and Describing Data Using Python 5. Chapter 4: Part 1 Exemplar Project – Load, Clean, and Describe Diabetes Data in Python 6. Part 2:Introduction to Python for Biostatistics – Methodology and Examples
7. Chapter 5: Introduction to Python for Biostatistics 8. Chapter 6: Biostatistical Inference Using Hypothesis Tests and Effect Sizes 9. Chapter 7: Predictive Biostatistics Using Python 10. Chapter 8: Part 2 Exercise – T-Test, ANOVA, and Linear and Logistic Regression 11. Chapter 9: Biostatistical Inference and Predictive Analytics Using Cardiovascular Study Data 12. Part 3:Clinical Study Design, Analysis, and Synthesizing Evidence
13. Chapter 10: Clinical Study Design 14. Chapter 11: Survival Analysis in Biomedical Research 15. Chapter 12: Meta-Analysis – Synthesizing Evidence from Multiple Studies 16. Chapter 13: Survival Predictive Analysis and Meta-Analysis Practice 17. Chapter 14: Part 3 Exemplar Project – Meta-Analysis of Survival Data in Clinical Research 18. Part 4:Biological and Statistical Variables and Frameworks, and a Final Practical Project from the Field of Biology
19. Chapter 15: Understanding Biological Variables 20. Chapter 16: Data Analysis Frameworks and Performance for Life Sciences Research 21. Chapter 17: Part 4 Exercise – Performing Statistics for Biology Studies in Python 22. Index 23. Other Books You May Enjoy

Summary

In this chapter, we learned about the basics of survival analysis, including where it is used and how we can improve drug evaluation. We also learned about its use in biomedical research through the use of time series data. Also, we learned how to implement survival analysis using two Python packages, scikit-survival and lifelines. We evaluated different exemplar data in the oncology area, the veteran lung cancer and breast cancer datasets, from the scikit-survival package. Finally, we covered the theory and practice of Kaplan-Meier plots, logrank tests, and Cox regression typically used in survival analysis. We learned how to compare different treatments and survival rates of different groups using Kaplan-Meier curves. Finally, we learned how to implement these methods and interpret the results using real-world survival data.

In the next chapter, we will learn about meta-analysis. We will also learn how to synthesize the evidence from multiple studies.

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